September 11 - Pershing the Thought - Fact-checking website Snopes said the story is false.

Fact-checking website Snopes.com said the story is false. 
Claim:   U.S. General John J. Pershing effectively discouraged Muslim terrorists in the Philippines by killing them and burying their bodies along with those of pigs. 

HOW TO STOP ISLAMIC TERRORISTS . . . it worked once in our History . . . 
Once in US history an episode of Islamic terrorism was very quickly stopped. It happened in the Philippines about 1911, when Gen. John J. Pershing was in command of the garrison. There had been numerous Islamic terrorist attacks, so "Black Jack" told his boys to catch the perps and teach them a lesson. 

Pointing a gun into the face of Islamic terrorists won't make them flinch. They welcome the chance to die for Allah. Like Gen. Pershing, we must show them that they won't get to Muslim heaven (which they believe has an endless supply of virgins) but instead will die with the hated pigs of the devil. 

If we put a baby pig on every airline flight then all suicide terrorists would abort their missions as they would not want their souls to go to hell. Additionally, if we drop shipped, oh say, 100,000 pigs into Afghanistan I think our recon and assault efforts may be more successful. Apparently Muslims dislike the very sight of pigs A LOT! 

They are also adamantly opposed to alcohol, thus we spike their water supply with a few thousand gallons of moonshine, get them drunk and turn the pigs loose. The war would be over in a weekend.

Origins:   The idea of subduing militant Muslims by threatening to bury them with pigs has held currency for many years. Just a few weeks before the September 11  terrorist attacks on America in 2001, Deputy Israeli police minister Gideon Esra suggested in the Israeli newspaper Yediot Aharonot that Palestinian suicide bombers be buried in pig skin or blood. In the 1939 film The Real Glory, Gary Cooper portrays Dr. Bill Canavan, an American Army doctor in 1906 Manila who "tries to protect the native population from ruthless invaders" (i.e., "Muslim fanatics"). At one point in the film, the Dr. Canavan character drapes a captured Muslim in a pigskin and proclaims that henceforth all slain Muslim rebels will be buried in pig skins, thereby discouraging their "savagery" by threatening to prevent their entry into paradise. And, of course, the above-cited anecdote about General Pershing's handling of terrorists in the Philippines has circulated widely on the Internet ever since 9/11 even made the rounds at the top levels of U.S. government: 

The history of the American administration of the Philippines between the Spanish cession of the islands at the conclusion of the Spanish-American war in 1898 and the attainment of full political independence in 1946 (including American attempts to "pacify" various independence-minded groups through military means) is too long and complicated to explicate here. Suffice it to say that General John J. "Black Jack" Pershing was part of the process as Governor of the troublesome Moro Province  between 1909 and 1913. We haven't yet found any references to this alleged incident in Pershing biographies, however, nor does it match the way Pershing is generally recorded as having dealt with the Moros in 1911. When they refused to obey Pershing's order banning firearms by surrendering their weapons, his response was to draft a letter to the Moros expressing sorrow that his soldiers had to resort to killing them to enforce the order: 

"The keys to heaven are not in the hands of settlers," said Sheikh Hassan Youssef, for Hamas, whose military wing has sent dozens of suicide bombers into Israel. 

Islamic reference books say the body of a martyr who dies for the faith is so pure that it does not need to be washed before burial, in contrast to the usual Muslim practice. - Read More at the snopes

Pershing the Thought - Snopes - More

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The story appears to a false, according to Snopes.com.